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<pre>$DATA
 
<pre>$DATA
 
BLW-ED Analysis
 
BLW-ED Analysis
C1  1
+
C1   
 
N  7.0        0.000000    0.000000    0.728869
 
N  7.0        0.000000    0.000000    0.728869
 
H  1.0        0.000000    0.951707    1.095972
 
H  1.0        0.000000    0.951707    1.095972
Ligne 77 : Ligne 77 :
 
3/ Let  delocalize. This is just a standard DFT calculation. (TO CHECK with Yirong)
 
3/ Let  delocalize. This is just a standard DFT calculation. (TO CHECK with Yirong)
  
'''Remarks :'''  
+
'''Preliminary Remarks :'''  
 
B3LYP calculation in Gamess is specified in $CONTRL :  
 
B3LYP calculation in Gamess is specified in $CONTRL :  
 
<pre>$CONTRL  
 
<pre>$CONTRL  
Ligne 85 : Ligne 85 :
 
And 6-31G(d) basis set is requested with
 
And 6-31G(d) basis set is requested with
 
<pre>$BASIS  GBASIS=N31 NGAUSS=6 NDFUNC=1 $END</pre>
 
<pre>$BASIS  GBASIS=N31 NGAUSS=6 NDFUNC=1 $END</pre>
 +
'''Step by step help :'''
 +
1/ Perform a NH3  BLW calculation of the fragment alone in the geometry of the complexe with  $BLW NBLOCK=1 and keep the .blw file for next step (same for BH3).
 +
We obtain
 +
nh3.log: FINAL R-B3LYP ENERGY IS      -56.5111505350
 +
bh3.log: FINAL R-B3LYP ENERGY IS      -26.5644674370
 +
= > summ = -83.07561797
  
 
[[VBFile 4-4 | all input files are there]]
 
[[VBFile 4-4 | all input files are there]]

Version du 5 juin 2012 à 16:50

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BLW method & HuLiS program


To the Tutors

Sason remarks and prospective 2 hours talk +

Philippe's remark on the initially proposed tutorial. are included in bold.

Qualitative

  • ?...

Computational

Proposal from Yirong

  • 1) benzene and formamide - focus is on the structural and energetic impact from conjugation, and how to correlate the results with experimental evidences;
  • 2) butadiene - focus is on the conjugation in the planar structure and the hyperconjugation in the staggered structure, and their impact on the rotational barrier;
  • 3) acid-base and H-bonding systems: BLW energy decomposition analyses.
  • 4) visualize the results. I have been using GaussView and ChemDraw, but other graphical software should be fine with me as well.
  • 5) Questions from any participant can be discussed and tested on site.

Exercices

Exercice 1 (title)

Subject

Here is a image example

Example alt text
Image example: Allyl Cation MO's

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 a line that starts with a blanck character make a sort of box 

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To do

Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text

Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text Text text

Access to files :

allyl.bfi, .xmi and orb

butadiene.xmi

Exercice 2 (title)

Exercice 3 (title)

Exercice 4 (BH3... NH3) electronics at the B3LYP 6-31G(d) level

BLW energy decomposition analysis can be used to shed light into the nature of intermolecular interactions. Example of NH3∙∙∙BH3. Visualize the polarization and electron transfer effects using the electron density difference (EDD) maps.

1/ Make orbitals of BH3 alone (then NH3) in the geometry of the complex

$DATA
BLW-ED Analysis
C1  
N   7.0        0.000000    0.000000    0.728869
H   1.0        0.000000    0.951707    1.095972
H   1.0        0.824202   -0.475853    1.095972
H   1.0       -0.824202   -0.475853    1.095972
B   5.0        0.000000    0.000000   -0.934793
H   1.0        0.000000   -1.170908   -1.238679
H   1.0       -1.014036    0.585454   -1.238679
H   1.0        1.014036    0.585454   -1.238679 
 $END

2/ Let fragment orbitals to polarize in the full complex.

3/ Let delocalize. This is just a standard DFT calculation. (TO CHECK with Yirong)

Preliminary Remarks : B3LYP calculation in Gamess is specified in $CONTRL :

$CONTRL 
SCFTYP=RHF DFTTYP=B3LYP 
runtyp=energy maxit=200 icharg=0 
$END

And 6-31G(d) basis set is requested with

$BASIS  GBASIS=N31 NGAUSS=6 NDFUNC=1 $END

Step by step help : 1/ Perform a NH3 BLW calculation of the fragment alone in the geometry of the complexe with $BLW NBLOCK=1 and keep the .blw file for next step (same for BH3). We obtain nh3.log: FINAL R-B3LYP ENERGY IS -56.5111505350 bh3.log: FINAL R-B3LYP ENERGY IS -26.5644674370 = > summ = -83.07561797

all input files are there