Ready to ChemTools
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ChemTools on Google Colab
Run the 3-line commands below in one code block to get miniconda and install to /usr/local:
!wget -c https://repo.continuum.io/miniconda/Miniconda2-4.5.11-Linux-x86_64.sh
!chmod +x Miniconda2-4.5.11-Linux-x86_64.sh
!bash ./Miniconda2-4.5.11-Linux-x86_64.sh -b -f -p /usr/local
!conda install -y --prefix /usr/local -c theochem horton
!pip install --upgrade numpy
!pip install git+https://github.com/theochem/chemtools.git
import sys sys.path.append('/usr/local/lib/python2.7/site-packages/')
!nosetests -v chemtools
import chemtools
Python
You are expected to be familiar with Python: https://www.python.org/
To refresh your mind on Python, you can take advantage of many tutorials, videos, blogs and courses on Python. We also recommend you to go through the Jupyter notebooks in the link below:
https://github.com/molmod/Tutorial/tree/master/python
You can download the notebooks and run the code block to get some hands-on experience.
For Windows Laptops
If you are running Windows on your laptop, we assume that you are using Windows 10. If so, please install "Windows Subsystem for Linux Installation" through the link below:
https://docs.microsoft.com/en-us/windows/wsl/install-win10
Git
We use Git for version control and hosting our code on GitHub. Please install it through:
https://git-scm.com/book/en/v2/Getting-Started-Installing-Git
ParaView
You should install ParaView and TTK prior to the session. You can either
- install it following this instructions: https://topology-tool-kit.github.io/installation.html
- download a virtual machine: https://topology-tool-kit.github.io/ieeeVisTutorial.html
Slides, data, demos, virtual machines and pre-installed software:
https://topology-tool-kit.github.io/ieeeVisTutorial.html
If you have any questions, please contact the ttk user email list: [1]